- Author:
- Dewan Sarwar <sarwarcse@gmail.com>
- Date:
- 2019-01-31 16:34:20+13:00
- Desc:
- Testing with Max's suggested way of annotation for weinstein_1995_max model
- Permanent Source URI:
- https://models.physiomeproject.org/workspace/584/rawfile/848b6a8fb585337adc4f3805c0ed682a6a5fd379/GI Model/NHE3.cellml
<?xml version="1.0" encoding="UTF-8"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqs="http://www.cellml.org/bqs/1.0#" xmlns:semsim="http://www.bhi.washington.edu/SemSim#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" name="NHE3" cmeta:id="NHE3">
<units name="flux">
<unit exponent="-3.0" prefix="centi" units="metre" />
<unit prefix="milli" units="mole" />
<unit exponent="-1.0" units="second" />
</units>
<units name="per_millisec">
<unit exponent="-1.0" prefix="milli" units="second" />
</units>
<units name="millisec">
<unit prefix="milli" units="second" />
</units>
<units name="mM">
<unit prefix="milli" units="mole" />
<unit exponent="-1.0" units="litre" />
</units>
<component name="environment">
<variable cmeta:id="environment.time" name="time" public_interface="out" units="second" />
</component>
<component name="NHE3">
<variable cmeta:id="NHE3.C_lumen_Na" name="C_lumen_Na" public_interface="in" units="mM" />
<variable cmeta:id="NHE3.C_int_Na" name="C_int_Na" public_interface="in" units="mM" />
<variable cmeta:id="NHE3.C_lumen_H" name="C_lumen_H" public_interface="in" units="mM" />
<variable cmeta:id="NHE3.C_int_H" name="C_int_H" public_interface="in" units="mM" />
<variable cmeta:id="NHE3.J_Na" name="J_Na" public_interface="in" units="flux" />
<variable cmeta:id="NHE3.J_H" name="J_H" public_interface="in" units="flux" />
</component>
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<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_84666" />
<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_17693" />
<ro:located_in rdf:resource="http://purl.obolibrary.org/obo/FMA_70973" />
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</rdf:Description>
<rdf:Description rdf:about="#NHE3.C_int_Na">
<semsim:isComputationalComponentFor>
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</semsim:physicalPropertyOf>
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
</rdf:Description>
</semsim:isComputationalComponentFor>
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</rdf:Description>
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<semsim:isComputationalComponentFor>
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<semsim:hasSinkParticipant>
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<rdf:Description rdf:about="#entity_4">
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</rdf:Description>
</semsim:hasPhysicalEntityReference>
</rdf:Description>
</semsim:hasSourceParticipant>
<semsim:name>H flow from cytosol to luminal</semsim:name>
</rdf:Description>
</semsim:physicalPropertyOf>
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593" />
</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>Flux of hydrogen from cytosol to luminal through NHE3 and apical membrane</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="#NHE3.C_lumen_Na">
<semsim:isComputationalComponentFor>
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<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340" />
</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>concentration of sodium in the luminal compartment</dcterms:description>
</rdf:Description>
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</semsim:hasSourceParticipant>
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</rdf:Description>
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</rdf:Description>
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</rdf:Description>
</semsim:isComputationalComponentFor>
<dcterms:description>concentration of hydrogen in the cytosol compartment</dcterms:description>
</rdf:Description>
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<semsim:isComputationalComponentFor>
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</semsim:isComputationalComponentFor>
<dcterms:description>concentration of hydrogen in the luminal compartment</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="#environment.time" dcterms:description="Time">
<semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_01023" />
</rdf:Description>
</rdf:RDF>
</model>
